Genome Assembly
I successfuly made the genome assembly of three Mediterranean fish draft genomes. Their genome sequence have been published recently in this paper. Here, I share the lessons I learned from assembling a genome using both long and short sequencing reads.
References
New genomic ressources for three exploited Mediterranean fishes
Katharina Fietz(1), Elena Trofimenko(1), Pierre-Edouard Guerin(1), Veronique Arnal, Montserrat Torres-Oliva, Stephane Lobreaux,Angel Perez-Ruzafa, Stephanie Manel, Oscar Puebla
Genomics, 2020 July 03. DOI: 10.1016/j.ygeno.2020.06.041
Platanus-allee is a de novo haplotype assembler enabling a comprehensive access to divergent heterozygous regions
Rei Kajitani, Dai Yoshimura, Miki Okuno, Yohei Minakuchi, Hiroshi Kagoshima, Asao Fujiyama, Kaoru Kubokawa, Yuji Kohara, Atsushi Toyoda, Takehiko Itoh
Nature Communications, February 2019. DOI: 10.1038/s41467-019-09575-2
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